201.     Tuma, R. and Thomas, G. J., Jr., "Raman Spectroscopy of Viruses." In Handbook of Vibrational Spectroscopy, Vol. 5, Applications in Life, Pharmaceutical and Natural Sciences, Chalmers, J. M. and Griffiths, P. R., eds., John Wiley and Sons, Chichester, pp. 3519-3535, 2002.

202.     Thomas, G. J., Jr., "New Structural Insights from Raman Spectroscopy of Proteins and Their Assemblies," Biospectroscopy 67:214-225, 2002.

203.     Movileanu, L., Benevides, J. M. and Thomas, G. J., Jr., "Determination of Base and Backbone Contributions to the Thermodynamics of Premelting and Melting Transitions in B DNA," Nucleic Acids Res. 30:3767-3777, 2002.

204.     Krafft, C., Benevides, J. M. and Thomas, G. J., Jr., "Secondary Structure Polymorphism in Oxytricha nova Telomeric DNA," Nucleic Acids Res. 31:3981-3991, 2002.

205.     Benevides, J. M., Juuti, J. T., Tuma, R., Bamford, D. H. and Thomas, G. J., Jr., "Characterization of Subunit-Specific Interactions in a Double-Stranded RNA Virus: Raman Difference Spectroscopy of the f6 Procapsid," Biochemistry 41:11946-11953, 2002.

206.     Tsuboi, M., Overman, S. A., Nakamura, K., Rodriguez-Casado, A. and Thomas, G. J., Jr., "Orientation and Interactions of an Essential Tryptophan (Trp 38) in the Capsid Subunit of Pf3 Filamentous Virus," Biophysical J. 34:1969-1976, 2003.

207.     Tsuboi, M., Kubo, Y., Ikeda, T., Overman, S. A., Osman, O. and Thomas, G. J., Jr., "Protein and DNA Residue Orientations in the Filamentous Virus Pf1 Determined by Polarized Raman and Polarized FTIR Spectroscopy," Biochemistry 42:940-950, 2003.

208.     Serban, D., Arciniegas, S. F., Vorgias, C. E. and Thomas, G. J., Jr., "Structure and Dynamics of the DNA-Binding Protein HU of B. stearothermophilus Investigated by Raman and Ultraviolet-Resonance Raman Spectroscopy," Protein Science 12:861-870, 2003.

209.     Rodriguez-Casado, A. and Thomas, G. J., Jr., "Structural Roles of Subunit Cysteines in the Folding and Assembly of the DNA Packaging Machine of Bacteriophage P22," Biochemistry 42:3437-3445, 2003.

210.     Kainov, D. E., Pirttimaa, M., Tuma, R., Butcher, S. J., Thomas, G. J., Jr., Bamford, D. H. and Makeyev, E. V., "RNA Packaging Device of Double-Stranded RNA Bacteriophages: Possibly as Simple as a Hexamer of P4 Protein," J. Biol. Chem. 278:48084-48091, 2003.

211.     Serban, D., Benevides, J. M. and Thomas, G. J., Jr., "HU Protein Employs Similar Mechanisms of Minor-Groove Recognition in Binding to Different B-DNA Sites," Biochemistry 42:7391-7399, 2003.

212.     Benevides, J. M., Overman, S. A. and Thomas, G. J., Jr., "Raman Spectroscopy of Proteins," In Current Protocols in Protein Science, Coligan, J. E., Dunn, B. M., Ploegh, H. L., Speicher, D. W. and Wingfield, P. T., Eds., pp. 17.8.1-17.8.35, 2003.

213.     Lísal, J., Kainov, D. E., Bamford, D. H., Thomas, G. J., Jr. and Tuma, R., "Enzymatic mechanisms of RNA translocation in double-stranded RNA bacteriophages," J. Biol. Chem. 279:1343-1350, 2004.

214.     Benevides, J. M., Bondre, P., Duda, R. L., Hendrix, R. W. and Thomas, G. J., Jr., "Domain structures and roles in HK97 capsid assembly and maturation," Biochemistry 43:5428-5436, 2004.

215.     Overman, S. A., Kristensen, D. M., Bondre, P., Hewitt, B. and Thomas, G. J., Jr., "Effects of virion and salt concentrations on the Raman signatures of Filamentous phages fd, Pf1, Pf3 and PH75," Biochemistry 43:13129-13136, 2004.

216.     Cockburn, J. J. B., Abrescia, N. G. A., Grimes, J. M., Sutton, G. C., Diprose, J. M., Benevides, J. M., Thomas, G. J., Jr., Bamford, J. K. H., Bamford, D. H. and Stuart, D. I., "Membrane structure and interactions with protein and DNA in bacteriophage PRD1," Nature 432:122-125, 2004.

217.     Combs, A., McCanna, K., Autrey, D, Laane, J., Overman, S. A. and Thomas, G. J., Jr., "Raman signature of the non-hydrogen-bonded tryptophan side chain in proteins: Experimental and ab initio spectra of 3-methylindole in the gas phase," J. Mol. Struct. 735-736:271-278, 2005.

218.     Benevides, J. M. and Thomas, G. J., Jr., "Local conformational changes induced in B-DNA by ethidium intercalation," Biochemistry 44:2993-2999, 2005.

219.     Overman, S. A., Bondre, P., Maiti, N. C. and Thomas, G. J., Jr., "Structural characterization of the filamentous bacteriophage PH75 from Thermus thermophilus by Raman and UV-resonance Raman spectroscopy," Biochemistry 44:3091-3100, 2005.

220.     Tsuboi, M., Benevides, J. M., Bondre, P. and Thomas, G. J., Jr., "Structural details of the thermophilic filamentous bacteriophage PH75 determined by polarized Raman microspectroscopy," Biochemistry 44: 4861-4869, 2005.

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