George J. Thomas, Jr., Ph.D.


(The publications are ordered by date, oldest to most recent.)

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141.     Guan, Y., Choy, G. S.-C., Wurrey, C. J., Glaser, R. and Thomas, G. J., Jr., "Vibrational Analysis of Nucleic Acids. 2. Ab Initio Calculation of the Molecular Force Field and Normal Modes of Dimethyl Phosphate," J. Phys. Chem. 99:12054-12062, 1995.

142.     Miura, T. and Thomas, G. J., Jr., "Structure and Dynamics of Interstrand Guanine Association in Quadruplex Telomeric DNA," Biochemistry 34:9645-9654, 1995.

143.     Duguid, J., Bloomfield, V. A., Benevides, J. M. and Thomas, G. J., Jr., "Raman Spectroscopy of DNA-Metal Complexes. II. The Thermal Denaturation of DNA in the Presence of Sr+2, Ba+2, Mg+2, Ca+2, Mn+2, Co+2, Ni+2, and Cd+2," Biophys. J. 69:2623-2641, 1995.

144.     Miura, T. and Thomas, G. J., Jr., "Optical and Vibrational Spectroscopic Methods." In Introduction to Biophysical Methods for Protein and Nucleic Acid Research, Glasel, J. A. and Deutscher, M. P., Eds., Academic Press, NY, pp. 261-315, 1995.

145.     Thomas, G. J., Jr., "Protein Analysis by Raman Spectroscopy." In Molecular Biology and Biotechnology, Meyers, R. A., Ed., VCH Publishers, Weinheim, pp. 737-741, 1995.

146.     Tuma, R., Russell, M., Rosendahl, M. and Thomas, G. J., Jr., "Solution Conformation of the Extracellular Domain of the Human Tumor Necrosis Factor Receptor Probed by Raman and UV-Resonance Raman Spectroscopy: Structural Effects of an Engineered PEG Linker," Biochemistry 34:15150-15156, 1995.

147.     Tuma, R., Bamford, J. H. K., Bamford, D. H., Russell, M. P. and Thomas, G. J., Jr., "Structure, Interactions and Dynamics of PRD1 Virus. I. Coupling of Subunit Folding and Capsid Assembly," J. Mol. Biol. 257:87-101, 1996.

148.     Tuma, R., Bamford, J. H. K., Bamford, D. H. and Thomas, G. J., Jr., "Structure, Interactions and Dynamics of PRD1 Virus. II. Organization of the Viral Membrane and DNA," J. Mol. Biol. 257:102-115, 1996.

149.     Tuma, R., Prevelige, P. E. P., Jr. and Thomas, G. J., Jr., "Structural Transitions in the Scaffolding and Coat Proteins of P22 Virus during Assembly and Disassembly," Biochemistry 35:4619-4627, 1996.

150.     Benevides, J. M., Kang, C. H. and Thomas, G. J., Jr., "Raman Signature of the Four- Stranded Intercalated Cytosine Motif in Crystal and Solution Structures of DNA Deoxycytidylates d(CCCT) and d(C8)," Biochemistry 35:5747-5755, 1996.

151.     Benevides, J. M., Terwilliger, T. C., Vohník, S. and Thomas, G. J., Jr., "Raman Spectroscopy of the Ff Gene V Protein and Complexes with Poly(dA): Nonspecific DNA Recognition and Binding," Biochemistry 35:9603-9606, 1996.

152.     Guan, Y. and Thomas, G. J., Jr., "Vibrational Analysis of Nucleic Acids. III. Conformation Dependent Raman Markers of the Phosphodiester Backbone Modeled by Dimethyl Phosphate," J. Mol. Struct. 379:31-41, 1996.

153.     Guan, Y. and Thomas, G. J., Jr., "Vibrational Analysis of Nucleic Acids. IV. Normal Modes of the DNA Phosphodiester Structure Modeled by Diethyl Phosphate," Biopolymers 39:813- 835, 1996.

154.     Guan, Y. and Thomas, G. J., Jr., "Vibrational Analysis of Nucleic Acids. V. Force Field and Conformation-Dependent Modes of the Phosphodiester Backbone Modeled by Diethyl Phosphate," Biophys. J. 71:2802-2814, 1996.

155.     Tsuboi, M., Ueda, T., Ushizawa, K., Ezaki, Y., Overman, S. A. and Thomas, G. J., Jr., "Raman Tensors for the Tryptophan Side Chain in Proteins Determined by Polarized Raman Microspectroscopy of Oriented N-Acetyl-L-Tryptophan Crystals," J. Mol. Struct. 379: 43- 50, 1996.

156.     Duguid, J. G., Bloomfield, V. A., Benevides, J. M. and Thomas, G. J., Jr., "DNA Melting Investigated by Differential Scanning Calorimetry and Raman Spectroscopy," Biophys. J. 71:3350-3360, 1996.

157.     Takeuchi, H., Matsuno, M., Overman, S. A. and Thomas, G. J., Jr., "Raman Linear Intensity Difference of Flow-Oriented Macromolecules: Orientation of the Indole Ring of Tryptophan-26 in Filamentous Virus fd," J. Am. Chem. Soc. 118:3498-3507, 1996.

158.     Tsuboi, M., Overman, S. A. and Thomas, G. J., Jr., "Orientation of Tryptophan-26 in Coat Protein Subunits of the Filamentous Virus Ff by Polarized Raman Microspectroscopy," Biochemistry 35:10403-10410, 1996.

159.     Overman, S. A., Tsuboi, M. and Thomas, G. J., Jr., "Subunit Orientation in the Filamentous Virus Ff (fd, f1, M13)," J. Mol. Biol. 259:331-336, 1996.

160.     Tuma, R. and Thomas, G. J., Jr., "Theory, Design and Characterization of a Microdialysis Flow Cell for Raman Spectroscopy," Biophys. J. 71:3454-3466, 1996.

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