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Fungal Genom. Biol. 6(1), 1-3, 2016 Verma, A., Kapros, T., Waterborg, J.H. Generation of a Ustilago maydis ade2 mutant
Fungal Genetic Reports 62, 8-13, 2016 Verma, A., Kapros, T., Waterborg, J.H. Differential sensitivity of Ustilago maydis to fungal antibiotics on simple and complex media
Epigenetics & Chromatin 5: 7, 2012 PB Talbert, K Ahmad, G Almouzni, J Ausio, F Berger, PL Bhalla, WM Bonner, WZ Cande, BP Chadwick, SWL Chan, GAM Cross, L Cui1, SI Dimitrov, D Doenecke, JM Eirin-López, MA Gorovsky, SB Hake, BA Hamkalo, S Holec, SE Jacobsen, K Kamieniarz, S Khochbin, AG Ladurner, D Landsman, JA Latham, B Loppin, HS Malik, WF Marzluff, JR Pehrson, J Postberg, R Schneider, MB Singh, MM Smith, E Thompson, ME Torres-Padilla, DJ Tremethick, BM Turner, JH Waterborg, H Wollmann, R Yelagandula, B Zhu and S Henikoff A unified phylogeny-based nomenclature for histone variants
Proof: Biochem. Cell Biol. 90(1), 79-95, 2012
Supplemental files 1, 2, 3.
Waterborg, J.H. Evolution of histone H3: Emergence of variants and conservation of post-translational modification sites
Preprint: J. Biol. Chem.
doi: 10.1074/jbc.M111.254383 2011

Published (with First Author name inversion error):
J. Biol. Chem. 286: 25790-25800, 2011
Verma, A., Kapros, T. and Waterborg, J.H. Identification of a Replication-Independent Replacement Histone H3 in the Basidiomycete Ustilago maydis
Biochim. Biophys. Acta - Gene Regulatory Mechanisms
1809: 353-359, 2011
Waterborg, J.H. Plant histone acetylation: In the beginning ...
Special Issue: Epigenetic control of cellular and developmental processes in plants
Biochem. Cell Biol. 89: 2011 Waterborg, J.H. Separating newly synthesized histone H3 from mature H3: analysis of H3 maturation in Saccharomyces cerevisiae and Ustilago maydis
Biochem. Cell Biol. 89: 2011 Verma, A. and Waterborg, J.H. Regulated gene expression studies of RC and RI histone H3 variants in Ustilago maydis
The Protein Protocols Handbook, 3rd Edition
(Ed. J.M. Walker) Humana Press, NJ, pp 7-10, 2009
Waterborg, J.H. The Lowry Method for Protein Quantitation
The Protein Protocols Handbook, 3rd Edition
(Ed. J.M. Walker) Humana Press, NJ, pp 239-249, 2009
Waterborg, J.H. Acetic Acid-Urea Polyacrylamide Gel Electrophoresis of Basic Proteins
The Protein Protocols Handbook, 3rd Edition
(Ed. J.M. Walker) Humana Press, NJ, pp 251-262, 2009
Waterborg, J.H. Acid-Urea-Triton Polyacrylamide Gel Electrophoresis of Histones
Biochem. Cell Biol. 87: 377, 2009 Waterborg, J.H. Functional analysis of the histone H3 variants of Ustilago maydis
The Plant Cell 17: 2439-2453, 2005 Van Dijk, K., Marley, K.E., Jeong, B-R, Xu, J., Hesson, J., Cerny, R.L., Waterborg, J.H., and Cerutti, H. Monomethyl Histone H3 Lysine 4 as an Epigenetic Mark for Silenced Chromatin in Chlamydomonas
Plant Sc. 168: 789-795, 2005 Kapros, T., Kelemen, Z., Waterborg, J.H. and Dudits, D. Short polypyrimidine/purine sequences modulate tissue specific control of a cell cycle variant alfalfa histone H3 gene promoter
Mol. Cell. Biol. 24: 10180-10192, 2004 Glowczewski, L., Waterborg, J.H. and Berman, J.G. Yeast Chromatin Assembly Complex-1 Protein Excludes Non-Acetylatable Forms of Histone H4 from Chromatin and the Nucleus
J. Biol. Chem. 278: 38109-38112, 2003 Song, O. K., Wang, X., Waterborg, J.H. and Sternglanz, R. An N-alpha-acetyltransferase responsible for acetylation of the N-terminal residues of histone H4 and H2A
The Protein Protocols Handbook, 2nd Edition
(Ed. J.M. Walker) Humana Press, NJ, pp 113-123, 2002
Waterborg, J.H. Acid-Urea-Triton Polyacrylamide Gel Electrophoresis of Histones
The Protein Protocols Handbook, 2nd Edition
(Ed. J.M. Walker) Humana Press, NJ, pp 103-111, 2002
Waterborg, J.H. Acetic Acid-Urea Polyacrylamide Gel Electrophoresis of Basic Proteins
Biochem. Cell Biol. 80: 279-293, 2002 Waterborg, J.H. and Kapros T. Kinetic Analysis of Histone Acetylation Turnover and Trichostatin A Induced Hyper- and Hypoacetylation in Alfalfa
Biochem. Cell Biol. 80: 363-378, 2002 Waterborg, J.H. Dynamics of Histone Acetylation In Vivo. A Function for Acetylation Turnover?
Transgenics Res. 11: 69-72, 2002 Kelemen, Z., Mai, A., Kapros, T., Fehér, A., Györgyey, J., Waterborg, J.H. and Dudits, D. Transformation Vector Based on Promoter and Intron Sequences of a Replacement Histone H3 Gene. A Tool for High, Constitutive Gene Expression in Plants
Biochemistry 40: 2599-2605, 2001 Waterborg, J.H. Dynamics of Histone Acetylation in Saccharomyces cerevisia
Plant Mol. Biol. 45: 17-30, 2001 Chaubet-Gigot, N., Kapros, T., Flenet, M., Kahn, K., Gigot, C. and Waterborg, J.H. Tissue-dependent enhancement of transgene expression by introns of replacement histone H3 genes of Arabidopsis
J. Biol. Chem. 275: 13007-13011, 2000 Waterborg, J.H. Steady-state Levels of Histone Acetylation in Saccharomyces cerevisiae
J. Biol. Chem. 273: 27602-27609, 1998 Waterborg, J.H. Dynamics of Histone Acetylation in Chlamydomonas reinhardtii
DNA Sequence 7:209-216, 1997 Robertson, A.J., Kapros, T. and Waterborg, J.H. A Cell Cycle-Regulated Histone H3 Gene of Alfalfa with an Atypical Promoter Structure
J.Mol. Evol. 43:194-206, 1996 Waterborg, J.H. and Robertson, A.J. Common Features of Analogous Replacement histone H3 Genes in Animals and Plants
DNA Sequence 6:137-146, 1996 Robertson, A.J., Kapros, T., Dudits, D. and Waterborg, J.H. Identification of the Three Highly Expressed Replacement Histone H3 Genes of Alfalfa
Plant Physiol. 109:393-407, 1995 Waterborg, J.H., Robertson, A.J., Tatar, D.L., Borza, C.M. and Davie, J.R. Histones of Chlamydomonas reinhardtii: Synthesis, Acetylation and Methylation
Plant Mol. Biol. 28:901-914, 1995 Kapros, T., Robertson, A.J. and Waterborg, J.H. Histone H3 Transcript Stability in Alfalfa
Focus 17(1):20-21, 1995 Kapros, T. and Waterborg, J.H. Rapid Extraction of Multiple RNA Samples from Plant Suspension Cells
Mol. Biotechnol. 2: 95-98, 1994 Kapros, T., Robertson, A.J. and Waterborg, J.H. A simple method to make better probes from short DNA fragments
Nucleic Acids Res. 21:2913-2915, 1993 Waterborg, J.H. and Robertson, A.J. Efficient large-scale purification of restriction fragments by solute-displacement ion-exchange HPLC
J. Biol. Chem. 268:4918-4921, 1993 Waterborg, J.H. Dynamic Methylation of Alfalfa Histone H3
J. Biol. Chem. 268:4912-4917, 1993 Waterborg, J.H. Histone Synthesis and Turnover in Alfalfa. Fast Loss of Highly Acetylated Replacement Histone H3.2
Plant Mol. Biol. 18:181-187, 1992 Waterborg, J.H. Existence of Two Histone H3 Variants in Dicotyledonous Plants and Correlation between their Acetylation and Plant Genome Size
Biochemistry 31:6211-6219, 1992 Waterborg, J.H. Identification of Five Sites of Acetylation in Alfalfa Histone H4
Plant Physiol. 96:453-458, 1991 Waterborg, J.H. Multiplicity of Histone H3 Variants in Wheat, Barley, Rice and Maize
J. Biol. Chem. 265:17157-17161, 1990 Waterborg, J.H. Sequence Analysis of Acetylation and Methylation of Two Histone H3 Variants of Alfalfa
Electrophoresis 11:638-641, 1990 Waterborg, J.H. Involvement of Cysteine Residues in the Electrophoretic Mobility of Histone H3 in Acid-Urea-Triton Gels
Biochim. Biophys. Acta. 1049:324-330, 1990 Waterborg, J.H., Harrington, R.E. and Winicov, I. Dynamic Histone Acetylation in Alfalfa Cells. Butyrate Interference With Acetate Labeling
Plant Cell Rep. 8:8-11, 1989 Winicov, I., Waterborg, J.H., Harrington, R.E. and McCoy, T.J. Messenger RNA Induction and Repression in Cellular Salt Tolerance of Alfalfa (Medicago sativa)
Sequences 28:4-5, 1989 Waterborg, J.H. and Harrington, R.E. Western Blotting of Histones to S & S NC Nitrocellulose Membranes
Plant Physiol. 90:237-245, 1989 Waterborg, J.H., Harrington, R.E. and Winicov, I. Differential Histone Acetylation in Alfalfa (Medicago sativa) Due to Growth in NaCl: Responses in Salt Stressed and Salt Tolerant Callus Cultures
Plant Mol. Biol. 10:369-371, 1988 Winicov, I, Maki, D.H., Waterborg, J.H., Riehm, M.R. and Harrington, R.E. Characterization of the Alfalfa (Medicago sativa) Genome by DNA Reassociation
Arch. Biochem. Biophys. 256:167-178, 1987 Waterborg, J.H., Harrington, R.E. and Winicov, I. Histone Variants and Acetylated Species From the Alfalfa Plant Medicago sativa
Anal. Biochem. 162:430-434, 1987 Waterborg, J.H. and Harrington, R.E. Western Blotting of Histones From Acid-Urea-Triton and SDS Polyacrylamide Gels
Computer Methods and Programs in Biomedicine
23:255-260, 1986
Waterborg, J.H. and Harrington, R.E. A Standard Multidimensional, Easy-Access Data File Structure for Apple II Computers
The Cell Division Cycle in Plants, Soc. Exp. Biol.
Seminar Series Vol. 26 (Eds. J.A. Bryant and D. Francis)
Cambridge University Press, Cambridge, UK, pp 15-35, 1985
Waterborg, J.H. and Shall, S. The Organization of Replicons
The Enzymology of Post-Translational Modification of Proteins,
Vol. 2 (Eds. R.B. Freedman and H.C. Hawkins) Academic Press, London, pp 125-185, 1985
Matthews, H.R. and Waterborg, J.H. Reversible Modifications of Nuclear Proteins and Their Significance
Methods in Molecular Biology. Vol. 2 "Nucleic Acids"
(Ed. J.M. Walker) Humana Press, NJ, pp 1-3, 1984
Waterborg, J.H. and Matthews, H.R. The Burton Assay for DNA
Methods in Molecular Biology. Vol. 1 "Proteins"
(Ed. J.M. Walker) Humana Press, NJ, pp 157-164, 1984
Waterborg, J.H. and Matthews, H.R. The Electrophoretic Elution of Proteins From Polyacrylamide Gels
Methods in Molecular Biology. Vol. 1 "Proteins"
(Ed. J.M. Walker) Humana Press, NJ, pp 153-155, 1984
Waterborg, J.H. and Matthews, H.R. Recovery of Proteins From Dried Polyacrylamide Gels After Fluorography
Methods in Molecular Biology. Vol. 1 "Proteins"
(Ed. J.M. Walker) Humana Press, NJ, pp 147-152, 1984
Waterborg, J.H. and Matthews, H.R. Fluorography of Polyacrylamide Gels Containing Tritium
Methods in Molecular Biology. Vol. 1 "Proteins"
(Ed. J.M. Walker) Humana Press, NJ, pp 1-3, 1984
Waterborg, J.H. and Matthews, H.R. The Lowry Method for Protein Quantitation
Eur. J. Biochem. 142:329-335, 1984 Waterborg, J.H. and Matthews, H.R. Patterns of Histone Acetylation in Physarum polycephalum. H2A and H2B acetylation is functionally distinct from H3 and H4 acetylation
Eur. J. Biochem. 136:245-252, 1983 Waterborg, J.H., Fried, S.R. and Matthews, H.R. Acetylation and Methylation Sites in Histone H4 From Physarum polycephalum
Cell Biophys. 5:265-279, 1983 Waterborg, J.H. and Matthews, H.R. Intranuclear Localization of Histone Acetylation in Physarum polycephalum and the Structure of Functionally Active Chromatin
FEBS Lett. 162:416-419, 1983 Waterborg, J.H. and Matthews, H.R. Acetylation sites in histone H3 from Physarum polycephalum
Biochemistry 22:1489-1496, 1983 Waterborg, J.H. and Matthews, H.R. Patterns of Histone Acetylation in the Cell Cycle of Physarum polycephalum
Biochemistry 22:38-51, 1983 Mende, L.M., Waterborg, J.H., Mueller, R.D. and Matthews, H.R. Isolation, Identification and Characterization of Histones From Plasmodia of the True Slime Mold Physarum polycephalum Using Extraction With Guanidine Hydrochloride
J.Biochemistry 92:1655-1661, 1982 Waterborg, J.H. and Kuyper, Ch.M.A. Substrate specificity and mode of action of the Zinc-metallo nuclease of Physarum polycephalum
Expt. Cell Res. 138:462-466, 1982 Waterborg, J.H. and Matthews, H.R. Control of histone acetylation. Cell-cycle dependence of deacetylase activity in Physarum nuclei.
Anal.Biochem. 122:313-318, 1982 Waterborg, J.H. and Matthews, H.R. A more sensitive assay for histone deacetylase
J.Biochem. 88:1715-1721, 1980 Waterborg, J.H., Poot, M. and Kuyper, Ch.M.A. Secretion of four alkaline DNases by plasmodia of Physarum polycephalum
J.Biochem. 87:651-661, 1980 Waterborg, J.H. and Kuyper, Ch.M.A. Purification and enzymatic characterization of three endoDNase isoenzymes from Physarum polycephalum
Biochim. Biophys. Acta 571:359-367, 1979 Waterborg, J.H. and Kuyper, Ch.M.A. Purification of an alkaline nuclease from Physaum polycephalum
Arch. Microbiol. 122:195-200, 1979 Waterborg, J.H., Van Brakel, H.F.W. and Kuyper, Ch.M.A. Differential synthesis of an alkaline endonuclease in Physarum polycephalum
Biochim. Biophys. Acta 478:224-233, 1977 Waterborg, J.H. and Kuyper, Ch.M.A. Endonuclease activity in nuclei of Physarum polycephalum. Partial purification and characterization

Last updated on October 19, 2012
© 2012 Jakob Waterborg.  E-mail <WaterborgJ@umkc.edu>